About
This site is a catalogue for discovering and downloading SKILL.md files and MCP definitions (including CWL) for CLI tools and workflows used with the Coala ecosystem. It exists to support exploration and research workflows—not as a guarantee of fitness for any particular purpose.
Install and use Coala
1. Install the client
Install the Coala client with pip.
pip install coala-client2. Search for a tool
Search the catalogue by name or keyword. Use --category to filter by a category from the browse page.
coala search bwa
coala search anndata --category "Python library"3. Add a tool as an MCP server
Import the tool’s CWL definitions as an MCP server in .agents/mcps/ of the current directory. Then list the configured servers.
coala mcp bwa
coala mcp-list4. Add a skill
Download the tool’s SKILL.md into .agents/skills/ of the current directory so your agent can use it.
coala skill bwaAdd --global to coala mcp or coala skill to install into ~/.agents/ for all projects. Run coala --help to see all commands.
Disclaimer
This site is for research and educational use only. Nothing on it is medical, diagnostic, legal, or regulatory advice. The CWL definitions and skills were generated by a Gemini agent and validated by Claude Code. AI validation does not guarantee correctness, so listings, workflows, MCP definitions, and skills may still be incomplete, outdated, or wrong for your environment. They can contain mistakes in parameters, data paths, tool versions, resource requirements, or scientific logic. Review and test any workflow before you rely on it. All materials are provided “as is” without warranty of any kind. To the fullest extent permitted by law, providers and contributors accept no liability for loss or damage from using this site or its downloads. In regulated, clinical, or production settings, follow your organization’s validation, quality, and compliance rules, and do not use this catalogue as a substitute for expert review.